SCOPe 2.03: Domain d3k5ob1: 3k5o B:2-389

Lineage for d3k5ob1 (3k5o B:2-389)

1. Root: SCOPe 2.03

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (16 proteins)
   contains Pfam PF00929

6. Protein automated matches [190162] (4 species)
   not a true protein

7. Species Escherichia coli [TaxId:83333] [225829] (1 PDB entry)

8. Domain d3k5ob1: 3k5o B:2-389 [212172]
   Other proteins in same PDB: d3k5oa2, d3k5ob2
   automated match to d1q8ia1

Details for d3k5ob1

PDB Entry: 3k5o, 2.2 Å

PDB Description: crystal structure of e.coli pol ii

PDB Compounds: (B:) DNA polymerase II

SCOPe Domain Sequences for d3k5ob1:

Sequence, based on SEQRES records:

>d3k5ob1 c.55.3.5 (B:2-389) automated matches {Escherichia coli [TaxId: 83333]}
aqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilqgeq
gfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmerfit
spvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqrivyml
gpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhaeryr
lplrlgrdnselewrehgfkngvffaqakgrliidgiealksafwnfssfsletvaqell
gegksidnpwdrmdeidrrfaedkpalatynlkncelvtqifhkteimpflleratvngl
pvdrhggsvaafghlyfprmhragyvap

Sequence, based on observed residues (ATOM records):

>d3k5ob1 c.55.3.5 (B:2-389) automated matches {Escherichia coli [TaxId: 83333]}
aqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilqgeq
gfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmerfit
spvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqrivyml
gpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhaeryr
lplrlgrdnselewrehgfkngvffaqakgrliidgiealksafwnfssfsletvaqell
gegdeidrrfaedkpalatynlkncelvtqifhkteimpflleratvnglpvdrhggsva
afghlyfprmhragyvap

Timeline for d3k5ob1:

• d3k5ob1 is new in SCOPe 2.03-stable
  
• d3k5ob1 appears in SCOPe 2.04
  
• d3k5ob1 appears in the current release, SCOPe 2.08