SCOPe 2.04: Domain d3k5ma1: 3k5m A:-1-389

Lineage for d3k5ma1 (3k5m A:-1-389)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (16 proteins)
   contains Pfam PF00929

6. Protein automated matches [190162] (4 species)
   not a true protein

7. Species Escherichia coli [TaxId:562] [187263] (13 PDB entries)

8. Domain d3k5ma1: 3k5m A:-1-389 [212168]
   Other proteins in same PDB: d3k5ma2
   automated match to d1q8ia1
   protein/DNA complex; complexed with ca, dg3

Details for d3k5ma1

PDB Entry: 3k5m, 2.04 Å

PDB Description: crystal structure of e.coli pol ii-abasic dna-ddgtp lt(-2, 2) ternary complex

PDB Compounds: (A:) DNA polymerase II

SCOPe Domain Sequences for d3k5ma1:

Sequence, based on SEQRES records:

>d3k5ma1 c.55.3.5 (A:-1-389) automated matches {Escherichia coli [TaxId: 562]}
phmaqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilq
geqgfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmer
fitspvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqriv
ymlgpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhae
ryrlplrlgrdnselewrehgfkngvffaqakgrliidgiealksafwnfssfsletvaq
ellgegksidnpwdrmdeidrrfaedkpalatynlkncelvtqifhkteimpflleratv
nglpvdrhggsvaafghlyfprmhragyvap

Sequence, based on observed residues (ATOM records):

>d3k5ma1 c.55.3.5 (A:-1-389) automated matches {Escherichia coli [TaxId: 562]}
phmaqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilq
geqgfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmer
fitspvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqriv
ymlgpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhae
ryrlplrlgrdnselewrehkngffaqakgrliidgiealksafwnfssfsletvaqell
gegsidnpwdrmdeidrrfaedkpalatynlkncelvtqifhkteimpflleratvnglp
vdrhggsvaafghlyfprmhragyvap

Timeline for d3k5ma1:

• d3k5ma1 first appeared in SCOPe 2.03
  
• d3k5ma1 appears in SCOPe 2.05
  
• d3k5ma1 appears in the current release, SCOPe 2.08