SCOPe 2.04: Domain d3k5la1: 3k5l A:-2-389

Lineage for d3k5la1 (3k5l A:-2-389)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (16 proteins)
   contains Pfam PF00929

6. Protein automated matches [190162] (4 species)
   not a true protein

7. Species Escherichia coli [TaxId:562] [187263] (13 PDB entries)

8. Domain d3k5la1: 3k5l A:-2-389 [212166]
   Other proteins in same PDB: d3k5la2
   automated match to d1q8ia1
   protein/DNA complex; complexed with dtp, mg

Details for d3k5la1

PDB Entry: 3k5l, 2.7 Å

PDB Description: crystal structure of e.coli pol ii-abasic dna-datp lt(0, 3) ternary complex

PDB Compounds: (A:) DNA polymerase II

SCOPe Domain Sequences for d3k5la1:

Sequence; same for both SEQRES and ATOM records:

>d3k5la1 c.55.3.5 (A:-2-389) automated matches {Escherichia coli [TaxId: 562]}
gphmaqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhil
qgeqgfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylme
rfitspvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqri
vymlgpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkha
eryrlplrlgrdnselewrehgfkngvffaqakgrliidgiealksafwnfssfsletva
qellgegksidnpwdrmdeidrrfaedkpalatynlkncelvtqifhkteimpfllerat
vnglpvdrhggsvaafghlyfprmhragyvap

Timeline for d3k5la1:

• d3k5la1 first appeared in SCOPe 2.03
  
• d3k5la1 appears in SCOPe 2.05
  
• d3k5la1 appears in the current release, SCOPe 2.08