SCOPe 2.03: Domain d3gybb_: 3gyb B:

Lineage for d3gybb_ (3gyb B:)

1. Root: SCOPe 2.03

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.0: automated matches [191439] (1 protein)
   not a true family

6. Protein automated matches [190646] (31 species)
   not a true protein

7. Species Corynebacterium glutamicum [TaxId:1718] [225651] (1 PDB entry)

8. Domain d3gybb_: 3gyb B: [210731]
   automated match to d3k9cb_
   complexed with mg

Details for d3gybb_

PDB Entry: 3gyb, 1.6 Å

PDB Description: crystal structure of a laci-family transcriptional regulatory protein from corynebacterium glutamicum

PDB Compounds: (B:) Transcriptional regulators (LACI-FAMILY TRANSCRIPTIONAL REGULATORY PROTEIN)

SCOPe Domain Sequences for d3gybb_:

Sequence, based on SEQRES records:

>d3gybb_ c.93.1.0 (B:) automated matches {Corynebacterium glutamicum [TaxId: 1718]}
tqliavliddysnpwfidliqslsdvltpkgyrlsvidsltsqagtdpitsalsmrpdgi
iiaqdipdftvpdslppfviagtritqasthdsvanddfrgaeiatkhlidlghthiahl
rvgsgaglrrfesfeatmrahgleplsndylgpavehagytetlallkehpevtaifssn
ditaigalgaarelglrvpedlsiigydntplaqtrlinlttiddnsigvgynaalllls
mldpeaphpeimhtlqpsliergtcapr

Sequence, based on observed residues (ATOM records):

>d3gybb_ c.93.1.0 (B:) automated matches {Corynebacterium glutamicum [TaxId: 1718]}
tqliavliddysnpwfidliqslsdvltpkgyrlsvidsltsqagtdpitsalsmrpdgi
iiaqdipdftvpdslpdsvanddfrgaeiatkhlidlghthiahlrvgsgaglrrfesfe
atmrahgleplsndylgpavehagytetlallkehpevtaifssnditaigalgaarelg
lrvpedlsiigydntplaqtrlinlttiddnsigvgynaallllsmleimhtlqpslier
gtcapr

Timeline for d3gybb_:

• d3gybb_ is new in SCOPe 2.03-stable
  
• d3gybb_ appears in SCOPe 2.04
  
• d3gybb_ appears in the current release, SCOPe 2.08