Lineage for d3f47a2 (3f47 A:243-344)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2006475Fold a.100: 6-phosphogluconate dehydrogenase C-terminal domain-like [48178] (1 superfamily)
    multihelical; common core is formed around two long antiparallel helices related by (pseudo) twofold symmetry
  4. 2006476Superfamily a.100.1: 6-phosphogluconate dehydrogenase C-terminal domain-like [48179] (13 families) (S)
    N-terminal domain is Rossmann-fold with a family-specific C-terminal extension
  5. 2006661Family a.100.1.11: HMD dimerization domain-like [140777] (1 protein)
    dimer similar to those of the GDP-mannose 6-dehydrogenase and class I KARI domains
    automatically mapped to Pfam PF03201
  6. 2006662Protein 5,10-methenyltetrahydromethanopterin hydrogenase, HMD [140778] (1 species)
  7. 2006663Species Methanocaldococcus jannaschii [TaxId:2190] [140779] (6 PDB entries)
    Uniprot Q58194 243-344
  8. 2006664Domain d3f47a2: 3f47 A:243-344 [209789]
    Other proteins in same PDB: d3f47a1
    automated match to d2b0ja1
    complexed with cmo, fe2, i2c, na

Details for d3f47a2

PDB Entry: 3f47 (more details), 1.75 Å

PDB Description: the crystal structure of [fe]-hydrogenase (hmd) holoenzyme from methanocaldococcus jannaschii
PDB Compounds: (A:) 5,10-methenyltetrahydromethanopterin hydrogenase

SCOPe Domain Sequences for d3f47a2:

Sequence; same for both SEQRES and ATOM records: (download)

>d3f47a2 a.100.1.11 (A:243-344) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Methanocaldococcus jannaschii [TaxId: 2190]}

SCOPe Domain Coordinates for d3f47a2:

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Timeline for d3f47a2:

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