Lineage for d3dooa2 (3doo A:100-267)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2090218Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2090219Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2093723Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (12 protein domains)
    extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site
  6. 2093967Protein Shikimate 5-dehydrogenase AroE [89538] (6 species)
  7. 2093998Species Staphylococcus epidermidis [TaxId:176279] [225658] (2 PDB entries)
  8. 2094000Domain d3dooa2: 3doo A:100-267 [209247]
    Other proteins in same PDB: d3dooa1
    automated match to d1p77a1
    complexed with skm

Details for d3dooa2

PDB Entry: 3doo (more details), 2.2 Å

PDB Description: Crystal structure of shikimate dehydrogenase from Staphylococcus epidermidis complexed with shikimate
PDB Compounds: (A:) Shikimate dehydrogenase

SCOPe Domain Sequences for d3dooa2:

Sequence, based on SEQRES records: (download)

>d3dooa2 c.2.1.7 (A:100-267) Shikimate 5-dehydrogenase AroE {Staphylococcus epidermidis [TaxId: 176279]}
dgigyvnglkqiyegiedayililgaggaskgianelykivrptltvanrtmsrfnnwsl
ninkinlshaeshldefdiiinttpagmngntdsvislnrlashtlvsdivynpyktpil
ieaeqrgnpiyngldmfvhqgaesfkiwtnlepdikamkniviqklkg

Sequence, based on observed residues (ATOM records): (download)

>d3dooa2 c.2.1.7 (A:100-267) Shikimate 5-dehydrogenase AroE {Staphylococcus epidermidis [TaxId: 176279]}
dgigyvnglkqiyegiedayililgaggaskgianelykivrptltvanrtmsrfnnwsl
ninkinlshaeshldefdiiinttpvislnrlashtlvsdivynpyktpilieaeqrgnp
iyngldmfvhqgaesfkiwtnlepdikamkniviqklkg

SCOPe Domain Coordinates for d3dooa2:

Click to download the PDB-style file with coordinates for d3dooa2.
(The format of our PDB-style files is described here.)

Timeline for d3dooa2:

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d3dooa1