Lineage for d3d8ub_ (3d8u B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2143708Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    parallel beta-sheet of 6 strands, order 213456
  4. 2143709Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families) (S)
    Similar in architecture to the superfamily II but partly differs in topology
  5. 2143989Family c.93.1.0: automated matches [191439] (1 protein)
    not a true family
  6. 2143990Protein automated matches [190646] (70 species)
    not a true protein
  7. 2144281Species Vibrio parahaemolyticus [TaxId:670] [225484] (1 PDB entry)
  8. 2144283Domain d3d8ub_: 3d8u B: [209041]
    automated match to d3hs3b_

Details for d3d8ub_

PDB Entry: 3d8u (more details), 2.88 Å

PDB Description: The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633
PDB Compounds: (B:) PurR transcriptional regulator

SCOPe Domain Sequences for d3d8ub_:

Sequence, based on SEQRES records: (download)

>d3d8ub_ c.93.1.0 (B:) automated matches {Vibrio parahaemolyticus [TaxId: 670]}
ysialiipslfekacahflpsfqqalnkagyqlllgysdysieqeekllstflesrpagv
vlfgsehsqrthqlleasntpvleiaelsskasylnigvdhfevgkactrhlieqgfknv
gfigargnhstlqrqlhgwqsamienyltpdhflttheapssqlgaeglaklllrdssln
alvcsheeiaigalfechrrvlkvptdiaiiclegssmgehaypsltsaefdyermgtka
aekllhaikgepeerptsmgfklkrrastain

Sequence, based on observed residues (ATOM records): (download)

>d3d8ub_ c.93.1.0 (B:) automated matches {Vibrio parahaemolyticus [TaxId: 670]}
ysialiipslfekacahflpsfqqalnkagyqlllgysdysieqeekllstflesrpagv
vlfgsehsqrthqlleasntpvleiaelsskasylnigvdhfevgkactrhlieqgfknv
gfigargnhstlqrqlhgwqsamienyltpdhflttheapssqlgaeglaklllrdssln
alvcsheeiaigalfechrrvlkvptdiaiiclegssmgehaypsltsaefdyermgtka
aekllhaikepeeptsmgfklkrrastain

SCOPe Domain Coordinates for d3d8ub_:

Click to download the PDB-style file with coordinates for d3d8ub_.
(The format of our PDB-style files is described here.)

Timeline for d3d8ub_:

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Domains from other chains:
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d3d8ua_