Lineage for d3bpca1 (3bpc A:1-107)

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1510240Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1510241Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1510242Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1511401Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 1511793Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (46 PDB entries)
  8. 1511811Domain d3bpca1: 3bpc A:1-107 [208686]
    Other proteins in same PDB: d3bpca2, d3bpcb1, d3bpcb2
    automated match to d3t65a1
    complexed with kda, kdb, mg, zn

Details for d3bpca1

PDB Entry: 3bpc (more details), 1.85 Å

PDB Description: co-crystal structure of s25-2 fab in complex with 5-deoxy-4-epi-2,3- dehydro kdo (4.8) kdo
PDB Compounds: (A:) Fab, antibody fragment (IgG1k), light chain

SCOPe Domain Sequences for d3bpca1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3bpca1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

SCOPe Domain Coordinates for d3bpca1:

Click to download the PDB-style file with coordinates for d3bpca1.
(The format of our PDB-style files is described here.)

Timeline for d3bpca1:

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