Lineage for d3bd4b_ (3bd4 B:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2019634Protein automated matches [190119] (22 species)
    not a true protein
  7. 2020203Species Mouse (Mus musculus) [TaxId:10090] [186842] (156 PDB entries)
  8. 2020312Domain d3bd4b_: 3bd4 B: [208612]
    automated match to d1eeqa_
    protein/DNA complex; complexed with btb, cd

Details for d3bd4b_

PDB Entry: 3bd4 (more details), 2.4 Å

PDB Description: Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
PDB Compounds: (B:) catalytic antibody

SCOPe Domain Sequences for d3bd4b_:

Sequence, based on SEQRES records: (download)

>d3bd4b_ b.1.1.1 (B:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
lvmsqspsslavsagekvtmsckssqslfnsrtrknylawyqqkpgqspklliywastre
sgvpdrftgsgsgtdftltissvqaedlavyyckqsyyhmytfgsgtkleik

Sequence, based on observed residues (ATOM records): (download)

>d3bd4b_ b.1.1.1 (B:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
lvmsqspsslavsagekvtmsckssqslfnsrtrknylawyqqkpgqspklliywastre
sgvpdrftgsgsgtdftltissvqaedlavyyckqsytfgsgtkleik

SCOPe Domain Coordinates for d3bd4b_:

Click to download the PDB-style file with coordinates for d3bd4b_.
(The format of our PDB-style files is described here.)

Timeline for d3bd4b_: