SCOPe 2.06: Domain d2yv2a2: 2yv2 A:129-295

Lineage for d2yv2a2 (2yv2 A:129-295)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
   3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345

4. Superfamily c.23.4: Succinyl-CoA synthetase domains [52210] (2 families)

5. Family c.23.4.1: Succinyl-CoA synthetase domains [52211] (3 proteins)
   contain additional N-terminal strand "0", antiparallel to strand 2

6. Protein Succinyl-CoA synthetase, alpha-chain, C-terminal domain [52212] (5 species)

7. Species Aeropyrum pernix [TaxId:272557] [225352] (1 PDB entry)

8. Domain d2yv2a2: 2yv2 A:129-295 [207721]
   Other proteins in same PDB: d2yv2a1
   automated match to d1euda2

Details for d2yv2a2

PDB Entry: 2yv2, 2.2 Å

PDB Description: Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Aeropyrum pernix K1

PDB Compounds: (A:) succinyl-coa synthetase alpha chain

SCOPe Domain Sequences for d2yv2a2:

Sequence, based on SEQRES records:

>d2yv2a2 c.23.4.1 (A:129-295) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Aeropyrum pernix [TaxId: 272557]}
ncpgaitpgqakvgimpghifkeggvavvsrsgtltyeisymltrqgigqstvigiggdp
ivglsftealklfqedpqtealvligeiggdmeeraaemikkgeftkpviayiagrtapp
ekrmghagaiimmgtgtyegkvkalreagvevaetpfevpelvrkal

Sequence, based on observed residues (ATOM records):

>d2yv2a2 c.23.4.1 (A:129-295) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Aeropyrum pernix [TaxId: 272557]}
ncpgaitpgqakvgimpghifkeggvavvsrsgtltyeisymltrqgigqstvigiggdp
ivglsftealklfqedpqtealvligeiggdmeeraaemikkgeftkpviayiagrtgty
egkvkalreagvevaetpfevpelvrkal

Timeline for d2yv2a2:

• d2yv2a2 first appeared in SCOPe 2.03
  
• d2yv2a2 appears in SCOPe 2.05
  
• d2yv2a2 appears in SCOPe 2.07
  
• d2yv2a2 appears in the current release, SCOPe 2.08