SCOPe 2.08: Domain d2ynhb_: 2ynh B:

Lineage for d2ynhb_ (2ynh B:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.2: Reverse transcriptase [56686] (3 proteins)

6. Protein automated matches [190211] (7 species)
   not a true protein

7. Species Hiv-1 m:b_hxb2r [TaxId:11706] [187165] (10 PDB entries)

8. Domain d2ynhb_: 2ynh B: [207677]
   Other proteins in same PDB: d2ynha2, d2ynha3
   automated match to d1hqeb_
   complexed with eur, tar

Details for d2ynhb_

PDB Entry: 2ynh, 2.9 Å

PDB Description: HIV-1 Reverse Transcriptase in complex with inhibitor GSK500

PDB Compounds: (B:) p51 RT

SCOPe Domain Sequences for d2ynhb_:

Sequence, based on SEQRES records:

>d2ynhb_ e.8.1.2 (B:) automated matches {Hiv-1 m:b_hxb2r [TaxId: 11706]}
ietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaik
kkdstkwrklvdfrelnkrtqdfwevqlgiphpaglkkkksvtvldvgdayfsvpldedf
rkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfrkqnpdiviyqym
ddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpi
vlpekdswtvndiqklvgklnwasqiypgikvrqlckllrgtkalteviplteeaelela
enreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtnd
vkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvk
lwyq

Sequence, based on observed residues (ATOM records):

>d2ynhb_ e.8.1.2 (B:) automated matches {Hiv-1 m:b_hxb2r [TaxId: 11706]}
ietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaik
kkdstkwrklvdfrelnkrtqdfwevqlgiphpaglkkkksvtvldvgdayfsvpldedf
rkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfrkqnpdiviyqym
ddlyvgsdleigqhrtkieelrqhllrwgltwmgyelhpdkwtvqpivlpekdswtvndi
qklvgklnwasqiypgikvrqlckllrgtkalteviplteeaelelaenreilkepvhgv
yydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyartndvkqlteavqkittesivi
wgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyq

Timeline for d2ynhb_:

• d2ynhb_ first appeared in SCOPe 2.03
  
• d2ynhb_ appears in SCOPe 2.07