Lineage for d2ykma2 (2ykm A:430-557)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2460924Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2462855Superfamily c.55.3: Ribonuclease H-like [53098] (16 families) (S)
    consists of one domain of this fold
  5. 2464026Family c.55.3.0: automated matches [191357] (1 protein)
    not a true family
  6. 2464027Protein automated matches [190396] (36 species)
    not a true protein
  7. 2464138Species Human immunodeficiency virus type 1 bh10 [TaxId:11678] [225195] (20 PDB entries)
  8. 2464144Domain d2ykma2: 2ykm A:430-557 [207658]
    Other proteins in same PDB: d2ykma1, d2ykma3, d2ykmb_
    automated match to d1bqna1
    complexed with ca, ykn

Details for d2ykma2

PDB Entry: 2ykm (more details), 2.9 Å

PDB Description: crystal structure of hiv-1 reverse transcriptase (rt) in complex with a difluoromethylbenzoxazole (dfmb) pyrimidine thioether derivative, a non-nucleoside rt inhibitor (nnrti)
PDB Compounds: (A:) Reverse transcriptase/ribonuclease H

SCOPe Domain Sequences for d2ykma2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2ykma2 c.55.3.0 (A:430-557) automated matches {Human immunodeficiency virus type 1 bh10 [TaxId: 11678]}

SCOPe Domain Coordinates for d2ykma2:

Click to download the PDB-style file with coordinates for d2ykma2.
(The format of our PDB-style files is described here.)

Timeline for d2ykma2:

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