SCOPe 2.08: Domain d2yi9d1: 2yi9 D:11-790

Lineage for d2yi9d1 (2yi9 D:11-790)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.0: automated matches [227142] (1 protein)
   not a true family

6. Protein automated matches [226844] (11 species)
   not a true protein

7. Species Infectious pancreatic necrosis virus [TaxId:11002] [226177] (4 PDB entries)

8. Domain d2yi9d1: 2yi9 D:11-790 [207622]
   Other proteins in same PDB: d2yi9a2, d2yi9b2, d2yi9c2, d2yi9d2, d2yi9e2
   automated match to d2pgga1
   protein/RNA complex; complexed with cl, k, mg

Details for d2yi9d1

PDB Entry: 2yi9, 2.2 Å

PDB Description: structure of the rna polymerase vp1 from infectious pancreatic necrosis virus in complex with magnesium

PDB Compounds: (D:) RNA-directed RNA polymerase

SCOPe Domain Sequences for d2yi9d1:

Sequence, based on SEQRES records:

>d2yi9d1 e.8.1.0 (D:11-790) automated matches {Infectious pancreatic necrosis virus [TaxId: 11002]}
kasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmve
letdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkq
ltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktv
gytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssaglp
yigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgeryt
qvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimt
iirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtne
dgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvae
wvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgyladgsdlppi
rpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqi
vryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegit
lsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlld
qrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllkssltetreale

Sequence, based on observed residues (ATOM records):

>d2yi9d1 e.8.1.0 (D:11-790) automated matches {Infectious pancreatic necrosis virus [TaxId: 11002]}
kasiltalmipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlr
qmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfp
tgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlakll
eqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdtta
ealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrni
wsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldnded
lvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwa
tfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmt
kefmdleektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldll
gwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqivryeairlvgg
wnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlv
dintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlr
dqalalkpasssvdnwaeateelaqqqqllmkannllkssltetreale

Timeline for d2yi9d1:

• d2yi9d1 first appeared in SCOPe 2.03, called d2yi9d_
  
• d2yi9d1 appears in SCOPe 2.07