Lineage for d2yi9a_ (2yi9 A:)

  1. Root: SCOPe 2.05
  2. 1949014Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)
  3. 1951566Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 1951567Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 1953148Family e.8.1.0: automated matches [227142] (1 protein)
    not a true family
  6. 1953149Protein automated matches [226844] (5 species)
    not a true protein
  7. 1953154Species Infectious pancreatic necrosis virus [TaxId:11002] [226177] (4 PDB entries)
  8. 1953155Domain d2yi9a_: 2yi9 A: [207619]
    automated match to d2pgga1
    protein/RNA complex; complexed with cl, k, mg

Details for d2yi9a_

PDB Entry: 2yi9 (more details), 2.2 Å

PDB Description: structure of the rna polymerase vp1 from infectious pancreatic necrosis virus in complex with magnesium
PDB Compounds: (A:) RNA-directed RNA polymerase

SCOPe Domain Sequences for d2yi9a_:

Sequence, based on SEQRES records: (download)

>d2yi9a_ e.8.1.0 (A:) automated matches {Infectious pancreatic necrosis virus [TaxId: 11002]}
kasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmve
letdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkq
ltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktv
gytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssaglp
yigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgeryt
qvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimt
iirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtne
dgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvae
wvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgyladgsdlppi
rpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqi
vryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegit
lsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlld
qrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllkssltetreale
kt

Sequence, based on observed residues (ATOM records): (download)

>d2yi9a_ e.8.1.0 (A:) automated matches {Infectious pancreatic necrosis virus [TaxId: 11002]}
kasiltalmipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlr
qmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfp
tgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlakll
eqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdtta
ealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrni
wsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldnded
lvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwa
tfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmt
kefmdleektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldll
gwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqivryeairlvgg
wnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlv
dintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlr
dqalalkpasssvdnwaeateelaqqqqllmkannllkssltetrealekt

SCOPe Domain Coordinates for d2yi9a_:

Click to download the PDB-style file with coordinates for d2yi9a_.
(The format of our PDB-style files is described here.)

Timeline for d2yi9a_: