SCOPe 2.08: Domain d2ybvi2: 2ybv I:151-459

Lineage for d2ybvi2 (2ybv I:151-459)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

6. Protein automated matches [226984] (16 species)
   not a true protein

7. Species Thermosynechococcus elongatus [TaxId:197221] [226344] (2 PDB entries)

8. Domain d2ybvi2: 2ybv I:151-459 [207534]
   Other proteins in same PDB: d2ybva1, d2ybvb_, d2ybvc1, d2ybvd_, d2ybve1, d2ybvf_, d2ybvg1, d2ybvh_, d2ybvi1, d2ybvj_, d2ybvk1, d2ybvl_, d2ybvm1, d2ybvn_, d2ybvo1, d2ybvp_
   automated match to d1wdda1
   complexed with cl

Details for d2ybvi2

PDB Entry: 2ybv, 2.3 Å

PDB Description: structure of rubisco from thermosynechococcus elongatus

PDB Compounds: (I:) ribulose bisphosphate carboxylase large chain

SCOPe Domain Sequences for d2ybvi2:

Sequence, based on SEQRES records:

>d2ybvi2 c.1.14.1 (I:151-459) automated matches {Thermosynechococcus elongatus [TaxId: 197221]}
pphgiqverdklnkygrpllgctikpklglsaknygravyeclrggldftkddeninsqp
fqrwrdrflfvadaihkaqaetgeikghylnvtaptceemlkraefakelempiimhdfl
tagftanttlskwcrdngmllhihramhavmdrqknhgihfrvlakclrmsggdhihtgt
vvgklegdkavtlgfvdllrenyieqdrsrgiyftqdwasmpgvmavasggihvwhmpal
vdifgddavlqfgggtlghpwgnapgatanrvaleaciqarnegrdlmreggdiireaar
wspelaaac

Sequence, based on observed residues (ATOM records):

>d2ybvi2 c.1.14.1 (I:151-459) automated matches {Thermosynechococcus elongatus [TaxId: 197221]}
pphgiqverdklnkygrpllgctikpklglsaknygravyeclrggldftkddeninsqp
fqrwrdrflfvadaihkaqaetgeikghylnvtaptceemlkraefakelempiimhdfl
tagftanttlskwcrdngmllhihramhavmdrqknhgihfrvlakclrmsggdhihtgt
vvgklegdkavtlgfvdllrenyieqdrsrgiyftqdwasmpgvmavasggihvwhmpal
vdifgddavlqfgghpwgnapgatanrvaleaciqarnegrdlmreggdiireaarwspe
laaac

Timeline for d2ybvi2:

• d2ybvi2 first appeared in SCOPe 2.03
  
• d2ybvi2 appears in SCOPe 2.07