Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds) |
Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily) contains a cluster of helices and an alpha+beta sandwich |
Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families) |
Family e.3.1.3: Dac-like [144040] (3 proteins) Pfam PF02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family (69501) and (d2) six-stranded beta-sandwich with a crossed-loop topology |
Protein D-alanyl-D-alanine carboxypeptidase Dac [144043] (1 species) |
Species Actinomadura sp. [TaxId:1989] [144044] (16 PDB entries) Uniprot P39045 50-516 |
Domain d2y59b_: 2y59 B: [207478] automated match to d2wked_ complexed with mg, so4, za3 |
PDB Entry: 2y59 (more details), 2.5 Å
SCOPe Domain Sequences for d2y59b_:
Sequence; same for both SEQRES and ATOM records: (download)
>d2y59b_ e.3.1.3 (B:) D-alanyl-D-alanine carboxypeptidase Dac {Actinomadura sp. [TaxId: 1989]} rltelredidailedpalegavsgvvvvdtatgeelysrdggeqllpasnmklftaaaal evlgadhsfgtevaaesapgrrgevqdlylvgrgdptlsaedldamaaevaasgvrtvrg dlyaddtwfdserlvddwwpedepyaysaqisaltvahgerfdtgvtevsvtpaaegepa dvdlgaaegyaeldnravtgaagsantlvidrpvgtntiavtgslpadaapvtalrtvde paalaghlfeealesngvtvkgdvglggvpadwqdaevladhtsaelseilvpfmkfsnn ghaemlvksigqetagagtwdaglvgveealsglgvdtaglvlndgsglsrgnlvtadtv vdllgqagsapwaqtwsaslpvagesdpfvggtlanrmrgtaaegvveaktgtmsgvsal sgyvpgpegelafsivnnghsgpaplavqdaiavrlaeyaghqape
Timeline for d2y59b_: