SCOPe 2.08: Domain d2y3pb_: 2y3p B:

Lineage for d2y3pb_ (2y3p B:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.11: Type II DNA topoisomerase C-terminal domain-like [56718] (1 superfamily)
   4 domains: (1) toprim alpha/beta; (2) "winged helix"-like; (3) alpha+beta; (4) all-alpha

4. Superfamily e.11.1: Type II DNA topoisomerase C-terminal domain-like [56719] (2 families)

5. Family e.11.1.1: Type II DNA topoisomerase C-terminal domain-like [56720] (3 proteins)
   domain 2 contains the catalytic tyrosine residue

6. Protein automated matches [191158] (6 species)
   not a true protein

7. Species Escherichia coli [TaxId:562] [226047] (2 PDB entries)

8. Domain d2y3pb_: 2y3p B: [207461]
   automated match to d1ab4a_
   complexed with mg, sm8

Details for d2y3pb_

PDB Entry: 2y3p, 2.62 Å

PDB Description: crystal structure of n-terminal domain of gyra with the antibiotic simocyclinone d8

PDB Compounds: (B:) DNA gyrase subunit A

SCOPe Domain Sequences for d2y3pb_:

Sequence, based on SEQRES records:

>d2y3pb_ e.11.1.1 (B:) automated matches {Escherichia coli [TaxId: 562]}
ieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgd
vigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamryteirlakiah
elmadleketvdfvdnydgtekipdvmptkipnllvngssgiavgmatnipphnltevin
gclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevda
ktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgmrivievkrdav
gevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrtifelrk
ardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnvaamleragddaa
rpewlepefgvrdglyylteqqaqaildlrlqkltgleheklldeykelldqiaellril
gsadrlmevireelelvreqfgdkrrteit

Sequence, based on observed residues (ATOM records):

>d2y3pb_ e.11.1.1 (B:) automated matches {Escherichia coli [TaxId: 562]}
ieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgd
vigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamryteirlakiah
elmadleketvdfvdnydgtekipdvmptkipnllvngssgiavgmatnipphnltevin
gclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevda
ktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgmrivievkrdav
gevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrtifelrk
ardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnvaamledaarpew
lepefgvrdglyylteqqaqaildlrlqkltgleheklldeykelldqiaellrilgsad
rlmevireelelvreqfgdkrrteit

Timeline for d2y3pb_:

• d2y3pb_ first appeared in SCOPe 2.03
  
• d2y3pb_ appears in SCOPe 2.07