Lineage for d1agdb_ (1agd B:)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2344608Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2344609Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2348364Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 proteins)
  6. 2348365Protein beta2-microglobulin [88600] (6 species)
  7. 2348380Species Human (Homo sapiens) [TaxId:9606] [88602] (429 PDB entries)
    Uniprot P61769 21-119 ! Uniprot P01884
  8. 2348550Domain d1agdb_: 1agd B: [20742]
    Other proteins in same PDB: d1agda1, d1agda2

Details for d1agdb_

PDB Entry: 1agd (more details), 2.05 Å

PDB Description: antagonist hiv-1 gag peptides induce structural changes in hla b8-hiv-1 gag peptide (ggkkkykl-index peptide)
PDB Compounds: (B:) beta-2 microglobulin

SCOPe Domain Sequences for d1agdb_:

Sequence; same for both SEQRES and ATOM records: (download)

>d1agdb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

SCOPe Domain Coordinates for d1agdb_:

Click to download the PDB-style file with coordinates for d1agdb_.
(The format of our PDB-style files is described here.)

Timeline for d1agdb_: