SCOPe 2.03: Domain d2xlnd_: 2xln D:

Lineage for d2xlnd_ (2xln D:)

1. Root: SCOPe 2.03

2. Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)

3. Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
   contains a cluster of helices and an alpha+beta sandwich

4. Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families)

5. Family e.3.1.3: Dac-like [144040] (3 proteins)
   Pfam PF02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family (69501) and (d2) six-stranded beta-sandwich with a crossed-loop topology

6. Protein D-alanyl-D-alanine carboxypeptidase Dac [144043] (1 species)

7. Species Actinomadura sp. [TaxId:1989] [144044] (16 PDB entries)
   Uniprot P39045 50-516

8. Domain d2xlnd_: 2xln D: [207271]
   automated match to d1w79a1
   complexed with co, ewa, so4

Details for d2xlnd_

PDB Entry: 2xln, 2.4 Å

PDB Description: Crystal structure of a complex between Actinomadura R39 DD-peptidase and a boronate inhibitor

PDB Compounds: (D:) d-alanyl-d-alanine carboxypeptidase,

SCOPe Domain Sequences for d2xlnd_:

Sequence; same for both SEQRES and ATOM records:

>d2xlnd_ e.3.1.3 (D:) D-alanyl-D-alanine carboxypeptidase Dac {Actinomadura sp. [TaxId: 1989]}
rltelredidailedpalegavsgvvvvdtatgeelysrdggeqllpasnmklftaaaal
evlgadhsfgtevaaesapgrrgevqdlylvgrgdptlsaedldamaaevaasgvrtvrg
dlyaddtwfdserlvddwwpedepyaysaqisaltvahgerfdtgvtevsvtpaaegepa
dvdlgaaegyaeldnravtgaagsantlvidrpvgtntiavtgslpadaapvtalrtvde
paalaghlfeealesngvtvkgdvglggvpadwqdaevladhtsaelseilvpfmkfsnn
ghaemlvksigqetagagtwdaglvgveealsglgvdtaglvlndgsglsrgnlvtadtv
vdllgqagsapwaqtwsaslpvagesdpfvggtlanrmrgtaaegvveaktgtmsgvsal
sgyvpgpegelafsivnnghsgpaplavqdaiavrlaeyaghqapeg

Timeline for d2xlnd_:

• d2xlnd_ is new in SCOPe 2.03-stable
  
• d2xlnd_ appears in SCOPe 2.04
  
• d2xlnd_ appears in the current release, SCOPe 2.08