SCOPe 2.08: Domain d2xhba1: 2xhb A:1-347

Lineage for d2xhba1 (2xhb A:1-347)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
   consists of one domain of this fold

5. Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 proteins)
   contains Pfam PF00929

6. Protein automated matches [190162] (6 species)
   not a true protein

7. Species Thermococcus gorgonarius [TaxId:71997] [225933] (6 PDB entries)

8. Domain d2xhba1: 2xhb A:1-347 [207252]
   Other proteins in same PDB: d2xhba2
   automated match to d1qqca1
   protein/DNA complex; complexed with na

Details for d2xhba1

PDB Entry: 2xhb, 2.72 Å

PDB Description: crystal structure of dna polymerase from thermococcus gorgonarius in complex with hypoxanthine-containing dna

PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d2xhba1:

Sequence, based on SEQRES records:

>d2xhba1 c.55.3.5 (A:1-347) automated matches {Thermococcus gorgonarius [TaxId: 71997]}
mildtdyitedgkpvirifkkengefkidydrnfepyiyallkddsaiedvkkitaerhg
ttvrvvraekvkkkflgrpievwklyfthpqdvpairdkikehpavvdiyeydipfakry
lidkglipmegdeelkmlafdietlyhegeefaegpilmisyadeegarvitwknidlpy
vdvvstekemikrflkvvkekdpdvlityngdnfafaylkkrseklgvkfilgregsepk
iqrmgdrfavevkgrihfdlypvirrtinlptytleavyeaifgqpkekvyaeeiaqawe
tgeglervarysmedakvtyelgkeffpmeaqlsrlvgqslwdvsrs

Sequence, based on observed residues (ATOM records):

>d2xhba1 c.55.3.5 (A:1-347) automated matches {Thermococcus gorgonarius [TaxId: 71997]}
mildtdyitedgkpvirifkkengefkidydrnfepyiyallkddsaiedvkkitaerhg
ttvrvvraekvkkkflgrpievwklyfthpqdvpairdkikehpavvdiyeydipfakry
lidkglipmegdeelkmlafdietlefaegpilmisyadeegarvitwknidlpyvdvvs
tekemikrflkvvkekdpdvlityngdnfafaylkkrseklgvkfilgregsepkiqrmg
drfavevkgrihfdlypvirrtinlptytleavyeaifgqpkekvyaeeiaqawetgegl
ervarysmedakvtyelgkeffpmeaqlsrlvgqslwdvsrs

Timeline for d2xhba1:

• d2xhba1 first appeared in SCOPe 2.03
  
• d2xhba1 appears in SCOPe 2.07