Lineage for d1bjmb1 (1bjm B:1-111)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2739519Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2741614Protein Immunoglobulin light chain lambda variable domain, VL-lambda [88534] (9 species)
    VL-lambda domains of human antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the human genome; mouse VL-lambda domains belong to a single germline family
  7. 2741627Species Human (Homo sapiens), cluster 2 [TaxId:9606] [88536] (10 PDB entries)
  8. 2741635Domain d1bjmb1: 1bjm B:1-111 [20525]
    Other proteins in same PDB: d1bjma2, d1bjmb2
    VL dimer of Bence-Jones protein LOC

Details for d1bjmb1

PDB Entry: 1bjm (more details), 2.2 Å

PDB Description: loc naks, a lambda 1 type light-chain dimer (bence-jones protein) crystallized in nakso4
PDB Compounds: (B:) loc - lambda 1 type light-chain dimer

SCOPe Domain Sequences for d1bjmb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1bjmb1 b.1.1.1 (B:1-111) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}
esvltqppsasgtpgqrvtiscsgsssnigensvtwyqhlsgtapklliyednsrasgvs
drfsasksgtsaslaisglqpedetdyycaawddsldvavfgtgtkvtvlg

SCOPe Domain Coordinates for d1bjmb1:

Click to download the PDB-style file with coordinates for d1bjmb1.
(The format of our PDB-style files is described here.)

Timeline for d1bjmb1:

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Domains from same chain:
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d1bjmb2