SCOPe 2.06: Domain d1e6jl1: 1e6j L:1-105

Lineage for d1e6jl1 (1e6j L:1-105)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (5 families)

5. Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)

6. Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
   VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species

7. Species Mouse (Mus musculus), cluster 3.4 [TaxId:10090] [88530] (4 PDB entries)

8. Domain d1e6jl1: 1e6j L:1-105 [20496]
   Other proteins in same PDB: d1e6jh1, d1e6jh2, d1e6jl2, d1e6jp1, d1e6jp2
   part of Fab 13B5 against HIV-1 capsid protein p24

Details for d1e6jl1

PDB Entry: 1e6j, 3 Å

PDB Description: crystal structure of hiv-1 capsid protein (p24) in complex with fab13b5

PDB Compounds: (L:) immunoglobulin

SCOPe Domain Sequences for d1e6jl1:

Sequence; same for both SEQRES and ATOM records:

>d1e6jl1 b.1.1.1 (L:1-105) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.4 [TaxId: 10090]}
eivltqspaitaaslgqkvtitcsasssvsymhwyqqksgtspkpwiyeisklasgvpar
fsgsgsgtsysltissmeaedaaiyycqqwnypftfgsgtkleik

Timeline for d1e6jl1:

• d1e6jl1 first appeared (with stable ids) in SCOP 1.55
  
• d1e6jl1 appears in SCOPe 2.05
  
• d1e6jl1 appears in SCOPe 2.07
  
• d1e6jl1 appears in the current release, SCOPe 2.08