SCOP 1.65: Domain d1dzbb1: 1dzb B:1-117

Lineage for d1dzbb1 (1dzb B:1-117)

1. Root: SCOP 1.65

2. Class b: All beta proteins [48724] (126 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (4 families)

5. Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)

6. Protein Immunoglobulin heavy chain variable domain, VH [88543] (19 species)
   VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogeneous CDRs are listed as engineered species

7. Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] [88551] (28 PDB entries)

8. Domain d1dzbb1: 1dzb B:1-117 [20490]
   Other proteins in same PDB: d1dzba2, d1dzbb2, d1dzbx_, d1dzby_
   part of anti-lysozyme scFv 1F9

Details for d1dzbb1

PDB Entry: 1dzb, 2 Å

PDB Description: crystal structure of phage library-derived single-chain fv fragment 1f9 in complex with turkey egg-white lysozyme

SCOP Domain Sequences for d1dzbb1:

Sequence; same for both SEQRES and ATOM records:

>d1dzbb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.1}
qvklqqsgaelvkpgasvklsctasgfnikdtymhwvkqrpeqglewigridpangntky
dpkfqgkatitadtssntaylqlssltsedtavyycarwdwyfdvwgqgttvtvssg

Timeline for d1dzbb1:

• d1dzbb1 first appeared (with stable ids) in SCOP 1.55
  
• d1dzbb1 appears in SCOP 1.63
  
• d1dzbb1 appears in SCOP 1.67
  
• d1dzbb1 appears in the current release, SCOPe 2.08