Lineage for d1c5bl1 (1c5b L:1-107)

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 546418Fold b.1: Immunoglobulin-like beta-sandwich [48725] (25 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 546419Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 546420Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (28 proteins)
  6. 547289Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 547739Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (170 PDB entries)
  8. 547796Domain d1c5bl1: 1c5b L:1-107 [20476]
    Other proteins in same PDB: d1c5bh1, d1c5bh2, d1c5bl2
    part of humanized catalytic Fab 21D8 with a decarboxylase activity

Details for d1c5bl1

PDB Entry: 1c5b (more details), 2.1 Å

PDB Description: decarboxylase catalytic antibody 21d8 unliganded form

SCOP Domain Sequences for d1c5bl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1c5bl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4}
eiqltqspsslsaslgervsltcrtsqeisgylswlqqkpdgtikrliydatkldsgapk
rfsgsrsgsdysltisslesedfadyyclqyasfprtfgggtkleik

SCOP Domain Coordinates for d1c5bl1:

Click to download the PDB-style file with coordinates for d1c5bl1.
(The format of our PDB-style files is described here.)

Timeline for d1c5bl1:

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Domains from same chain:
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d1c5bl2