Lineage for d1fskl1 (1fsk L:1-118)

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 546418Fold b.1: Immunoglobulin-like beta-sandwich [48725] (25 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 546419Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 546420Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (28 proteins)
  6. 546556Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 546882Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88552] (148 PDB entries)
  8. 547059Domain d1fskl1: 1fsk L:1-118 [20473]
    Other proteins in same PDB: d1fska_, d1fskb1, d1fskb2, d1fskc2, d1fskd_, d1fske1, d1fske2, d1fskf2, d1fskg_, d1fskh1, d1fskh2, d1fski2, d1fskj_, d1fskk1, d1fskk2, d1fskl2
    part of anti-bet v1 Fab BV16

Details for d1fskl1

PDB Entry: 1fsk (more details), 2.9 Å

PDB Description: complex formation between a fab fragment of a monoclonal igg antibody and the major allergen from birch pollen bet v 1

SCOP Domain Sequences for d1fskl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1fskl1 b.1.1.1 (L:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2}
qvqlqqpgtelvrpgasvilsckasgytftsywinwvkqrpgqglewvgnifpsdsytny
nqkfkdkatltvdkssstaymqvnsptsedsavyyctrgardtwfaywgqgtlvtvsv

SCOP Domain Coordinates for d1fskl1:

Click to download the PDB-style file with coordinates for d1fskl1.
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Timeline for d1fskl1: