Lineage for d1fskk1 (1fsk K:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653521Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (181 PDB entries)
  8. 653724Domain d1fskk1: 1fsk K:1-107 [20472]
    Other proteins in same PDB: d1fska_, d1fskb2, d1fskc1, d1fskc2, d1fskd_, d1fske2, d1fskf1, d1fskf2, d1fskg_, d1fskh2, d1fski1, d1fski2, d1fskj_, d1fskk2, d1fskl1, d1fskl2
    part of anti-bet v1 Fab BV16

Details for d1fskk1

PDB Entry: 1fsk (more details), 2.9 Å

PDB Description: complex formation between a fab fragment of a monoclonal igg antibody and the major allergen from birch pollen bet v 1
PDB Compounds: (K:) immunoglobulin kappa light chain

SCOP Domain Sequences for d1fskk1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1fskk1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}
nivltqspksmsvsvgervtlsckasenvdtyvfwfqqkpdqspklllygpsnrytgvpd
rftgsgsttdftltissvqaedladyhcgqsysypytfgggtkleik

SCOP Domain Coordinates for d1fskk1:

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Timeline for d1fskk1: