Lineage for d1fskh1 (1fsk H:1-107)

  1. Root: SCOP 1.69
  2. 450777Class b: All beta proteins [48724] (144 folds)
  3. 450778Fold b.1: Immunoglobulin-like beta-sandwich [48725] (23 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 450779Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 450780Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (27 proteins)
  6. 451612Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 452039Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (162 PDB entries)
  8. 452218Domain d1fskh1: 1fsk H:1-107 [20470]
    Other proteins in same PDB: d1fska_, d1fskb2, d1fskc1, d1fskc2, d1fskd_, d1fske2, d1fskf1, d1fskf2, d1fskg_, d1fskh2, d1fski1, d1fski2, d1fskj_, d1fskk2, d1fskl1, d1fskl2

Details for d1fskh1

PDB Entry: 1fsk (more details), 2.9 Å

PDB Description: complex formation between a fab fragment of a monoclonal igg antibody and the major allergen from birch pollen bet v 1

SCOP Domain Sequences for d1fskh1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1fskh1 b.1.1.1 (H:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4}
nivltqspksmsvsvgervtlsckasenvdtyvfwfqqkpdqspklllygpsnrytgvpd
rftgsgsttdftltissvqaedladyhcgqsysypytfgggtkleik

SCOP Domain Coordinates for d1fskh1:

Click to download the PDB-style file with coordinates for d1fskh1.
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Timeline for d1fskh1: