Lineage for d1fskf1 (1fsk F:1-118)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287195Protein Immunoglobulin heavy chain variable domain, VH [88543] (19 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287419Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88552] (118 PDB entries)
  8. 287549Domain d1fskf1: 1fsk F:1-118 [20469]
    Other proteins in same PDB: d1fska_, d1fskb1, d1fskb2, d1fskc2, d1fskd_, d1fske1, d1fske2, d1fskf2, d1fskg_, d1fskh1, d1fskh2, d1fski2, d1fskj_, d1fskk1, d1fskk2, d1fskl2

Details for d1fskf1

PDB Entry: 1fsk (more details), 2.9 Å

PDB Description: complex formation between a fab fragment of a monoclonal igg antibody and the major allergen from birch pollen bet v 1
PDB Compounds: (F:)

SCOP Domain Sequences for d1fskf1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1fskf1 b.1.1.1 (F:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2}
qvqlqqpgtelvrpgasvilsckasgytftsywinwvkqrpgqglewvgnifpsdsytny
nqkfkdkatltvdkssstaymqvnsptsedsavyyctrgardtwfaywgqgtlvtvsv

SCOP Domain Coordinates for d1fskf1:

Click to download the PDB-style file with coordinates for d1fskf1.
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Timeline for d1fskf1: