Lineage for d1f3dh1 (1f3d H:1-121)

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 546418Fold b.1: Immunoglobulin-like beta-sandwich [48725] (25 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 546419Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 546420Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (28 proteins)
  6. 546556Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 546882Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88552] (148 PDB entries)
  8. 546897Domain d1f3dh1: 1f3d H:1-121 [20462]
    Other proteins in same PDB: d1f3dh2, d1f3dj1, d1f3dj2, d1f3dk2, d1f3dl1, d1f3dl2

Details for d1f3dh1

PDB Entry: 1f3d (more details), 1.87 Å

PDB Description: catalytic antibody 4b2 in complex with its amidinium hapten.

SCOP Domain Sequences for d1f3dh1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2}
eiqlqqsgpelvkpgasvkvsckasgysfidynihwvkqshgkslewigyivpysggttf
nqkfkgkatltvdkssstafmhlnsltfedsavyycandydgvywgqgttltvss

SCOP Domain Coordinates for d1f3dh1:

Click to download the PDB-style file with coordinates for d1f3dh1.
(The format of our PDB-style files is described here.)

Timeline for d1f3dh1: