Lineage for d1deee1 (1dee E:2001-2107)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2344608Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2344609Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2344610Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2345800Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2345885Species Human (Homo sapiens), cluster 1 [TaxId:9606] [88520] (19 PDB entries)
  8. 2345914Domain d1deee1: 1dee E:2001-2107 [20446]
    Other proteins in same PDB: d1deea2, d1deeb1, d1deeb2, d1deec2, d1deed1, d1deed2, d1deee2, d1deef1, d1deef2, d1deeg_, d1deeh_
    part of IgM RF 2A2

Details for d1deee1

PDB Entry: 1dee (more details), 2.7 Å

PDB Description: structure of s. aureus protein a bound to a human igm fab
PDB Compounds: (E:) igm rf 2a2

SCOPe Domain Sequences for d1deee1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1deee1 b.1.1.1 (E:2001-2107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}
diqmtqspsslsasvgdrvtitcrtsqsissylnwyqqkpgkapklliyaasslqsgvps
rfsgsgsgtdftltisslqpedfatyycqqsysaprtfgqgtkveik

SCOPe Domain Coordinates for d1deee1:

Click to download the PDB-style file with coordinates for d1deee1.
(The format of our PDB-style files is described here.)

Timeline for d1deee1: