Lineage for d1cr9l1 (1cr9 L:1-106A)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653172Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (127 PDB entries)
  8. 653198Domain d1cr9l1: 1cr9 L:1-106A [20430]
    Other proteins in same PDB: d1cr9h1, d1cr9h2, d1cr9l2
    part of anti-prion Fab 3F4

Details for d1cr9l1

PDB Entry: 1cr9 (more details), 2 Å

PDB Description: crystal structure of the anti-prion fab 3f4
PDB Compounds: (L:) fab antibody light chain

SCOP Domain Sequences for d1cr9l1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1cr9l1 b.1.1.1 (L:1-106A) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}
dvvmtqtplslsvtigqpasisckssqslldsdgktyliwvfqrpgqspkrliflvskrd
sgvpdrftgsgsgtdftlkisrveaedvgvyycwqgthfphtvgggtkleia

SCOP Domain Coordinates for d1cr9l1:

Click to download the PDB-style file with coordinates for d1cr9l1.
(The format of our PDB-style files is described here.)

Timeline for d1cr9l1:

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Domains from same chain:
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d1cr9l2