Lineage for d1dqml1 (1dqm L:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653521Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (181 PDB entries)
  8. 653618Domain d1dqml1: 1dqm L:1-107 [20426]
    Other proteins in same PDB: d1dqmh1, d1dqmh2, d1dqml2
    part of anti-lysozyme Fab HYHEL-63

Details for d1dqml1

PDB Entry: 1dqm (more details), 2.1 Å

PDB Description: crystal structure of anti-lysozyme antibody
PDB Compounds: (L:) anti-lysozyme antibody hyhel-63 (light chain)

SCOP Domain Sequences for d1dqml1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1dqml1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}
divltqspatlsvtpgdsvslscrasqsisnnlhwyqqkshesprllikyasqsisgips
rfsgsgsgtdftlsinsvetedfgmyfcqqsnswpytfgggtkleik

SCOP Domain Coordinates for d1dqml1:

Click to download the PDB-style file with coordinates for d1dqml1.
(The format of our PDB-style files is described here.)

Timeline for d1dqml1:

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Domains from same chain:
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d1dqml2