SCOPe 2.05: Domain d2dbya1: 2dby A:1-283

Lineage for d2dbya1 (2dby A:1-283)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.0: automated matches [191323] (1 protein)
   not a true family

6. Protein automated matches [190123] (96 species)
   not a true protein

7. Species Thermus thermophilus HB8 [TaxId:300852] [189850] (8 PDB entries)

8. Domain d2dbya1: 2dby A:1-283 [203943]
   Other proteins in same PDB: d2dbya2
   automated match to d1jala1
   complexed with fmt, gdp

Details for d2dbya1

PDB Entry: 2dby, 1.76 Å

PDB Description: Crystal structure of the GTP-binding protein YchF in complexed with GDP

PDB Compounds: (A:) GTP-binding protein

SCOPe Domain Sequences for d2dbya1:

Sequence, based on SEQRES records:

>d2dbya1 c.37.1.0 (A:1-283) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
mlavgivglpnvgkstlfnaltranalaanypfatidknvgvvplederlyalqrtfakg
ervppvvpthvefvdiaglvkgahkgeglgnqflahirevaaiahvlrcfpdpdvvhvmg
rvdpledaevvetellladlatlerrlerlrkearadrerlplleaaeglyvhlqegkpa
rtfppseavarflketplltakpviyvanvaeedlpdgrgnpqveavrrkaleegaevvv
vsarleaelaelsgeearellaayglqesglqrlaragyrald

Sequence, based on observed residues (ATOM records):

>d2dbya1 c.37.1.0 (A:1-283) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
mlavgivglpnvgkstlfnaltranalaanypfatidknvgvvplederlyalqrtfakg
ervppvvpthvefvdiaglvkgahkgeglgnqflahirevaaiahvlrcfpdpledaevv
etellladlatlerrlerlrkearadrerlplleaaeglyvhlqegkpartfppseavar
flketplltakpviyvanvaeedlpdgrgnpqveavrrkaleegaevvvvsarleaelae
lsgeearellaayglqesglqrlaragyrald

Timeline for d2dbya1:

• d2dbya1 first appeared in SCOPe 2.03
  
• d2dbya1 appears in SCOPe 2.04
  
• d2dbya1 appears in SCOPe 2.06
  
• d2dbya1 appears in the current release, SCOPe 2.08