SCOPe 2.06: Domain d2csda3: 2csd A:351-409

Lineage for d2csda3 (2csd A:351-409)

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.60: SAM domain-like [47768] (16 superfamilies)
   4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins

4. Superfamily a.60.2: RuvA domain 2-like [47781] (7 families)
   duplication: contains two helix-hairpin-helix (HhH) motifs

5. Family a.60.2.4: Topoisomerase V repeat domain [140626] (1 protein)
   this is a repeat family; one repeat unit is 2csb A:351-409 found in domain

6. Protein Topoisomerase V [140627] (1 species)

7. Species Methanopyrus kandleri [TaxId:2320] [140628] (2 PDB entries)
   Uniprot Q977W1 294-350! Uniprot Q977W1 351-409! Uniprot Q977W1 410-464! Uniprot Q977W1 465-519

8. Domain d2csda3: 2csd A:351-409 [203824]
   Other proteins in same PDB: d2csda1, d2csdb1
   automated match to d2csba1

Details for d2csda3

PDB Entry: 2csd, 2.9 Å

PDB Description: crystal structure of topoisomerase v (61 kda fragment)

PDB Compounds: (A:) Topoisomerase V

SCOPe Domain Sequences for d2csda3:

Sequence; same for both SEQRES and ATOM records:

>d2csda3 a.60.2.4 (A:351-409) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
rtlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiq

Timeline for d2csda3:

• d2csda3 first appeared in SCOPe 2.03
  
• d2csda3 appears in SCOPe 2.05
  
• d2csda3 appears in SCOPe 2.07
  
• d2csda3 appears in the current release, SCOPe 2.08