Lineage for d1c12a1 (1c12 A:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653521Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (181 PDB entries)
  8. 653712Domain d1c12a1: 1c12 A:1-107 [20380]
    Other proteins in same PDB: d1c12a2, d1c12b1, d1c12b2
    part of antibody directed against the musk odorant traseolide
    complexed with trz

Details for d1c12a1

PDB Entry: 1c12 (more details), 2.6 Å

PDB Description: insight in odorant perception: the crystal structure and binding characteristics of antibody fragments directed against the musk odorant traseolide
PDB Compounds: (A:) protein (antibody fragment fab)

SCOP Domain Sequences for d1c12a1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1c12a1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}
dieltqspssmsvslgdtvsitchasqgissnigwlqqkpgksfkgliyhgtnledgvps
rfsgsgsgadysltisslesedfadyycvqyvqfpftfgsgtkleik

SCOP Domain Coordinates for d1c12a1:

Click to download the PDB-style file with coordinates for d1c12a1.
(The format of our PDB-style files is described here.)

Timeline for d1c12a1:

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d1c12a2