SCOP 1.65: Domain d1boga1: 1bog A:1-107

Lineage for d1boga1 (1bog A:1-107)

1. Root: SCOP 1.65

2. Class b: All beta proteins [48724] (126 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (4 families)

5. Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)

6. Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
   VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species

7. Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (146 PDB entries)

8. Domain d1boga1: 1bog A:1-107 [20334]
   Other proteins in same PDB: d1boga2, d1bogb1, d1bogb2
   part of anti-gp120 (HIV-1) Fab CB 4-1

Details for d1boga1

PDB Entry: 1bog, 2.6 Å

PDB Description: anti-p24 (hiv-1) fab fragment cb41 complexed with an epitope-homologous peptide

SCOP Domain Sequences for d1boga1:

Sequence; same for both SEQRES and ATOM records:

>d1boga1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4}
dikmtqspssmytslgervtitckasqdinsfltwflqkpgkspktliyranrlmigvps
rfsgsgsgqtysltissleyedmgiyyclqyddfpltfgagtkldlk

Timeline for d1boga1:

• d1boga1 first appeared (with stable ids) in SCOP 1.55
  
• d1boga1 appears in SCOP 1.63
  
• d1boga1 appears in SCOP 1.67
  
• d1boga1 appears in the current release, SCOPe 2.08