SCOPe 2.08: Domain d1y2md_: 1y2m D:

Lineage for d1y2md_ (1y2m D:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.127: L-aspartase-like [48556] (1 superfamily)
   multihelical, consists of three all-alpha domains

4. Superfamily a.127.1: L-aspartase-like [48557] (3 families)

5. Family a.127.1.2: HAL/PAL-like [48572] (3 proteins)
   Pfam PF00221

6. Protein Phenylalanine ammonia-lyase, PAL [117028] (2 species)

7. Species Fungus (Rhodosporidium toruloides) [TaxId:5286] [117029] (3 PDB entries)
   Uniprot P11544

8. Domain d1y2md_: 1y2m D: [203184]
   automated match to d1t6pb_

Details for d1y2md_

PDB Entry: 1y2m, 1.6 Å

PDB Description: Crystal structure of phenylalanine ammonia-lyase from yeast Rhododporidium toruloides

PDB Compounds: (D:) phenylalanine ammonia-lyase

SCOPe Domain Sequences for d1y2md_:

Sequence, based on SEQRES records:

>d1y2md_ a.127.1.2 (D:) Phenylalanine ammonia-lyase, PAL {Fungus (Rhodosporidium toruloides) [TaxId: 5286]}
astnlavagshlpttqvtqvdivekmlaaptdstleldgyslnlgdvvsaarkgrpvrvk
dsdeirskidksveflrsqlsmsvygvttgfggsadtrtedaislqkallehqlcgvlps
sfdsfrlgrglenslplevvrgamtirvnsltrghsavrlvvlealtnflnhgitpivpl
rgtisasgdlsplsyiaaaisghpdskvhvvhegkekilyareamalfnlepvvlgpkeg
lglvngtavsasmatlalhdahmlsllsqsltamtveamvghagsfhpflhdvtrphptq
ievagnirkllegsrfavhheeevkvkddegilrqdryplrtspqwlgplvsdlihahav
ltieagqsttdnplidvenktshhggnfqaaavantmektrlglaqigklnftqltemln
agmnrglpsclaaedpslsyhckgldiaaaaytselghlanpvtthvqpaemanqavnsl
alisarrttesndvlslllathlycvlqaidlraiefefkkqfgpaivslidqhfgsamt
gsnlrdelvekvnktlakrleqtnsydlvprwhdafsfaagtvvevlsstslslaavnaw
kvaaaesaisltrqvretfwsaastsspalsylsprtqilyafvreelgvkarrgdvflg
kqevtigsnvskiyeaiksgrinnvllkmla

Sequence, based on observed residues (ATOM records):

>d1y2md_ a.127.1.2 (D:) Phenylalanine ammonia-lyase, PAL {Fungus (Rhodosporidium toruloides) [TaxId: 5286]}
astnlavttqvtqvdivekmlaaptdstleldgyslnlgdvvsaarkgrpvrvkdsdeir
skidksveflrstedaislqkallehqlcgvlpssfdsfrlgrglenslplevvrgamti
rvnsltrghsavrlvvlealtnflnhgitpivplrgtisasgdlsplsyiaaaisghpds
kvhvvhegkekilyareamalfnlepvvlgpkeglglvngtavsasmatlalhdahmlsl
lsqsltamtveamvghagsfhpflhdvtrphptqievagnirkllegsrfavhheeevde
gilrqdryplrtspqwlgplvsdlihahavltieagqsttdnplidvenktshhggnfqa
aavantmektrlglaqigklnftqltemlnagmnrglpsclaaedpslsyhckgldiaaa
aytselghlanpvtthvqpaemanqavnslalisarrttesndvlslllathlycvlqai
dlraiefefkkqfgpaivslidqhfgsamtgsnlrdelvekvnktlakrleqtnsydlvp
rwhdafsfaagtvvevlsstslslaavnawkvaaaesaisltrqvretfwsaastsspal
sylsprtqilyafvreelgvkarrgdvflgkqevtigsnvskiyeaiksgrinnvllkml
a

Timeline for d1y2md_:

• d1y2md_ first appeared in SCOPe 2.03
  
• d1y2md_ appears in SCOPe 2.07