Lineage for d1y2md_ (1y2m D:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2010255Fold a.127: L-aspartase-like [48556] (1 superfamily)
    multihelical, consists of three all-alpha domains
  4. 2010256Superfamily a.127.1: L-aspartase-like [48557] (3 families) (S)
  5. 2010395Family a.127.1.2: HAL/PAL-like [48572] (2 protein domains)
    Pfam PF00221
  6. 2010407Protein Phenylalanine ammonia-lyase, PAL [117028] (2 species)
  7. 2010408Species Fungus (Rhodosporidium toruloides) [TaxId:5286] [117029] (3 PDB entries)
    Uniprot P11544
  8. 2010412Domain d1y2md_: 1y2m D: [203184]
    automated match to d1t6pb_

Details for d1y2md_

PDB Entry: 1y2m (more details), 1.6 Å

PDB Description: Crystal structure of phenylalanine ammonia-lyase from yeast Rhododporidium toruloides
PDB Compounds: (D:) phenylalanine ammonia-lyase

SCOPe Domain Sequences for d1y2md_:

Sequence, based on SEQRES records: (download)

>d1y2md_ a.127.1.2 (D:) Phenylalanine ammonia-lyase, PAL {Fungus (Rhodosporidium toruloides) [TaxId: 5286]}
astnlavagshlpttqvtqvdivekmlaaptdstleldgyslnlgdvvsaarkgrpvrvk
dsdeirskidksveflrsqlsmsvygvttgfggsadtrtedaislqkallehqlcgvlps
sfdsfrlgrglenslplevvrgamtirvnsltrghsavrlvvlealtnflnhgitpivpl
rgtisasgdlsplsyiaaaisghpdskvhvvhegkekilyareamalfnlepvvlgpkeg
lglvngtavsasmatlalhdahmlsllsqsltamtveamvghagsfhpflhdvtrphptq
ievagnirkllegsrfavhheeevkvkddegilrqdryplrtspqwlgplvsdlihahav
ltieagqsttdnplidvenktshhggnfqaaavantmektrlglaqigklnftqltemln
agmnrglpsclaaedpslsyhckgldiaaaaytselghlanpvtthvqpaemanqavnsl
alisarrttesndvlslllathlycvlqaidlraiefefkkqfgpaivslidqhfgsamt
gsnlrdelvekvnktlakrleqtnsydlvprwhdafsfaagtvvevlsstslslaavnaw
kvaaaesaisltrqvretfwsaastsspalsylsprtqilyafvreelgvkarrgdvflg
kqevtigsnvskiyeaiksgrinnvllkmla

Sequence, based on observed residues (ATOM records): (download)

>d1y2md_ a.127.1.2 (D:) Phenylalanine ammonia-lyase, PAL {Fungus (Rhodosporidium toruloides) [TaxId: 5286]}
astnlavttqvtqvdivekmlaaptdstleldgyslnlgdvvsaarkgrpvrvkdsdeir
skidksveflrstedaislqkallehqlcgvlpssfdsfrlgrglenslplevvrgamti
rvnsltrghsavrlvvlealtnflnhgitpivplrgtisasgdlsplsyiaaaisghpds
kvhvvhegkekilyareamalfnlepvvlgpkeglglvngtavsasmatlalhdahmlsl
lsqsltamtveamvghagsfhpflhdvtrphptqievagnirkllegsrfavhheeevde
gilrqdryplrtspqwlgplvsdlihahavltieagqsttdnplidvenktshhggnfqa
aavantmektrlglaqigklnftqltemlnagmnrglpsclaaedpslsyhckgldiaaa
aytselghlanpvtthvqpaemanqavnslalisarrttesndvlslllathlycvlqai
dlraiefefkkqfgpaivslidqhfgsamtgsnlrdelvekvnktlakrleqtnsydlvp
rwhdafsfaagtvvevlsstslslaavnawkvaaaesaisltrqvretfwsaastsspal
sylsprtqilyafvreelgvkarrgdvflgkqevtigsnvskiyeaiksgrinnvllkml
a

SCOPe Domain Coordinates for d1y2md_:

Click to download the PDB-style file with coordinates for d1y2md_.
(The format of our PDB-style files is described here.)

Timeline for d1y2md_: