Lineage for d4kgnd1 (4kgn D:1-156)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2150174Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2150175Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2150317Family c.116.1.0: automated matches [191557] (1 protein)
    not a true family
  6. 2150318Protein automated matches [190961] (15 species)
    not a true protein
  7. 2150341Species Burkholderia pseudomallei [TaxId:425067] [188581] (2 PDB entries)
  8. 2150343Domain d4kgnd1: 4kgn D:1-156 [202846]
    Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
    automated match to d3e5ya_
    complexed with cl, sah

Details for d4kgnd1

PDB Entry: 4kgn (more details), 2.15 Å

PDB Description: Crystal structure of a tRNA (cytidine(34)-2'-O)-methyltransferase bound to S-adenosyl homocysteine
PDB Compounds: (D:) tRNA (cytidine(34)-2'-O)-methyltransferase

SCOPe Domain Sequences for d4kgnd1:

Sequence, based on SEQRES records: (download)

>d4kgnd1 c.116.1.0 (D:1-156) automated matches {Burkholderia pseudomallei [TaxId: 425067]}

Sequence, based on observed residues (ATOM records): (download)

>d4kgnd1 c.116.1.0 (D:1-156) automated matches {Burkholderia pseudomallei [TaxId: 425067]}

SCOPe Domain Coordinates for d4kgnd1:

Click to download the PDB-style file with coordinates for d4kgnd1.
(The format of our PDB-style files is described here.)

Timeline for d4kgnd1: