SCOPe 2.08: Domain d4jbxb_: 4jbx B:

Lineage for d4jbxb_ (4jbx B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.1: Nucleotide and nucleoside kinases [52541] (21 proteins)
   parallel beta-sheet of 5 strands, order 23145

6. Protein Thymidine kinase [52552] (4 species)
   contains insert all-alpha subdomain, res. 251-322

7. Species Herpes simplex virus type 1, different strains [TaxId:10298] [52553] (33 PDB entries)
   Uniprot P03176 46-375

8. Domain d4jbxb_: 4jbx B: [202730]
   automated match to d3f0tb_
   protein/DNA complex; complexed with edo, sk7, so4
   has additional subdomain(s) that are not in the common domain

Details for d4jbxb_

PDB Entry: 4jbx, 2.1 Å

PDB Description: Crystal structure of thymidine kinase from Herpes simplex virus type 1 in complex with SK-78

PDB Compounds: (B:) Thymidine kinase

SCOPe Domain Sequences for d4jbxb_:

Sequence, based on SEQRES records:

>d4jbxb_ c.37.1.1 (B:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}
mptllrvyidgphgmgkttttqllvalgsrddivyvpepmtywrvlgasetianiyttqh
rldqgeisagdaavvmtsaqitmgmpyavtdavlaphiggeagsshapppaltlifdrhp
iaallcypaarylmgsmtpqavlafvalipptlpgtnivlgalpedrhidrlakrqrpge
rldlamlaairrvygllantvrylqcggswredwgqlsgtavppqgaepqsnagprphig
dtlftlfrapellapngdlynvfawaldvlakrlrsmhvfildydqspagcrdallqlts
gmvqthvttpgsipticdlartfaremge

Sequence, based on observed residues (ATOM records):

>d4jbxb_ c.37.1.1 (B:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}
mptllrvyidgphgmgkttttqllvalgsrddivyvpepmtywrvlgasetianiyttqh
rldqgeisagdaavvmtsaqitmgmpyavtdavlaphiggeaapppaltlifdrhpiaal
lcypaarylmgsmtpqavlafvalipptlpgtnivlgalpedrhidrlakrdlamlaair
rvygllantvrylqcggswredwgqlsgpqsnagprphigdtlftlfrapellapngdly
nvfawaldvlakrlrsmhvfildydqspagcrdallqltsgmvqthvttpgsipticdla
rtfaremge

Timeline for d4jbxb_:

• d4jbxb_ first appeared in SCOPe 2.03
  
• d4jbxb_ appears in SCOPe 2.07