SCOPe 2.06: Domain d1gpom1: 1gpo M:1-112

Lineage for d1gpom1 (1gpo M:1-112)

Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.1: Immunoglobulin [48726] (5 families)
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)

Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species

Species Engineered (including hybrid species) [88533] (61 PDB entries)
SQ NA # humanized antidoby; bactericidal Fab-h6831 ! SQ NA # Humanized antibody ! SQ NA # humanized antibody ! SQ NA # engineered antibody

Domain d1gpom1: 1gpo M:1-112 [20226]
Other proteins in same PDB: d1gpoh1, d1gpoh2, d1gpoi1, d1gpoi2, d1gpol2, d1gpom2
complexed with so4

Details for d1gpom1

PDB Entry: 1gpo (more details), 1.95 Å

PDB Description: crystal structure of the rationally designed antibody m41 as a fab fragment

PDB Compounds: (M:) antibody m41

SCOPe Domain Sequences for d1gpom1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1gpom1 b.1.1.1 (M:1-112) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}
dieltqspatlsvtpgnsvsiscrasqslvnedgntylfwyqqkshesprllikyasqsi
sgipsrfsgsgsgtdftlsinsvetedlavyfcqqitdwpftfgggtkleik

SCOPe Domain Coordinates for d1gpom1:

Click to download the PDB-style file with coordinates for d1gpom1.
(The format of our PDB-style files is described here.)

Timeline for d1gpom1: