Lineage for d1gpom1 (1gpo M:1-112)

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 546418Fold b.1: Immunoglobulin-like beta-sandwich [48725] (25 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 546419Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 546420Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (28 proteins)
  6. 547289Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 547290Species Engineered (including hybrid species) [88533] (52 PDB entries)
  8. 547302Domain d1gpom1: 1gpo M:1-112 [20226]
    Other proteins in same PDB: d1gpoh1, d1gpoh2, d1gpoi1, d1gpoi2, d1gpol2, d1gpom2
    complexed with so4

Details for d1gpom1

PDB Entry: 1gpo (more details), 1.95 Å

PDB Description: crystal structure of the rationally designed antibody m41 as a fab fragment

SCOP Domain Sequences for d1gpom1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1gpom1 b.1.1.1 (M:1-112) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}
dieltqspatlsvtpgnsvsiscrasqslvnedgntylfwyqqkshesprllikyasqsi
sgipsrfsgsgsgtdftlsinsvetedlavyfcqqitdwpftfgggtkleik

SCOP Domain Coordinates for d1gpom1:

Click to download the PDB-style file with coordinates for d1gpom1.
(The format of our PDB-style files is described here.)

Timeline for d1gpom1: