SCOPe 2.05: Domain d4g4sd_: 4g4s D:

Lineage for d4g4sd_ (4g4s D:)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
   4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing

4. Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families)
   N-terminal residue provides two catalytic groups, nucleophile and proton donor

5. Family d.153.1.4: Proteasome subunits [56251] (4 proteins)

6. Protein automated matches [190144] (7 species)
   not a true protein

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187078] (39 PDB entries)

8. Domain d4g4sd_: 4g4s D: [202185]
   Other proteins in same PDB: d4g4sb_, d4g4sf_, d4g4sg_, d4g4sh_, d4g4sj_, d4g4sk_, d4g4sl_, d4g4sm_, d4g4sn_
   automated match to d2zcyc_
   complexed with ldz, mg

Details for d4g4sd_

PDB Entry: 4g4s, 2.49 Å

PDB Description: Structure of Proteasome-Pba1-Pba2 Complex

PDB Compounds: (D:) Proteasome component PRE6

SCOPe Domain Sequences for d4g4sd_:

Sequence, based on SEQRES records:

>d4g4sd_ d.153.1.4 (D:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
sifspdghifqveyaleavkrgtcavgvkgkncvvlgcerrstlklqdtritpskvskid
shvvlsfsglnadsriliekarveaqshrltledpvtveyltryvagvqqrytqsggvrp
fgvstliagfdprddepklyqtepsgiysswsaqtigrnsktvrefleknydrkeppatv
eecvkltvrsllevvqtgaknieitvvkpdsdivalsseeinqyvtqie

Sequence, based on observed residues (ATOM records):

>d4g4sd_ d.153.1.4 (D:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
sifspdghifqveyaleavkrgtcavgvkgkncvvlgcerklqdtritpskvskidshvv
lsfsglnadsriliekarveaqshrltledpvtveyltryvagvqqrytqsggvrpfgvs
tliagfdprddepklyqtepsgiysswsaqtigrnsktvrefleknydrkeppatveecv
kltvrsllevvnieitvvkpdsdivalsseeinqyvtqie

Timeline for d4g4sd_:

• d4g4sd_ first appeared in SCOPe 2.03
  
• d4g4sd_ appears in SCOPe 2.04
  
• d4g4sd_ appears in SCOPe 2.06
  
• d4g4sd_ appears in the current release, SCOPe 2.08, called d4g4sd1