Lineage for d1d5ba1 (1d5b A:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653521Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (181 PDB entries)
  8. 653695Domain d1d5ba1: 1d5b A:1-107 [20204]
    Other proteins in same PDB: d1d5ba2, d1d5bb1, d1d5bb2, d1d5bh1, d1d5bh2, d1d5bl2
    part of humanized oxy-cope catalytic Fab az-28

Details for d1d5ba1

PDB Entry: 1d5b (more details), 2.8 Å

PDB Description: unliganded mature oxy-cope catalytic antibody
PDB Compounds: (A:) chimeric OXY-COPE catalytic ANTIBODY AZ-28 (light chain)

SCOP Domain Sequences for d1d5ba1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1d5ba1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}
dikmtqspssmyaslgervtitckasqdinsylnwfqqkpgkspktliyrtnrlvdgvps
rfsgsgsgqdysltissleyedmgiyyclqydefpytfgsgtkleik

SCOP Domain Coordinates for d1d5ba1:

Click to download the PDB-style file with coordinates for d1d5ba1.
(The format of our PDB-style files is described here.)

Timeline for d1d5ba1: