Lineage for d1axsa1 (1axs A:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653521Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (181 PDB entries)
  8. 653671Domain d1axsa1: 1axs A:1-107 [20200]
    Other proteins in same PDB: d1axsa2, d1axsb1, d1axsb2, d1axsh1, d1axsh2, d1axsl2
    part of humanized oxy-cope catalytic Fab az-28
    complexed with cd, hop

Details for d1axsa1

PDB Entry: 1axs (more details), 2.6 Å

PDB Description: mature oxy-cope catalytic antibody with hapten
PDB Compounds: (A:) oxy-cope catalytic antibody

SCOP Domain Sequences for d1axsa1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1axsa1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}
elvltqspssmyaslgervtitckasqdinsylnwfqqkpgkspktliyrtnrlvdgvps
rfsgsgsgqdysltissleyedmgiyyclqydefpytfgsgtkleik

SCOP Domain Coordinates for d1axsa1:

Click to download the PDB-style file with coordinates for d1axsa1.
(The format of our PDB-style files is described here.)

Timeline for d1axsa1: