Lineage for d1yeel1 (1yee L:1-107)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287738Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287841Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (98 PDB entries)
  8. 287883Domain d1yeel1: 1yee L:1-107 [20156]
    Other proteins in same PDB: d1yeeh1, d1yeeh2, d1yeel2
    part of Fab D2.5
    complexed with pnb

Details for d1yeel1

PDB Entry: 1yee (more details), 2.2 Å

PDB Description: structure of a catalytic antibody, igg2a fab fragment (d2.5)

SCOP Domain Sequences for d1yeel1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yeel1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1}
divmtqspltlsvtigqpasisckssqsllysngktylswllqrpgqspkrliylvskld
sgvpdrftgsgsgtdftlkisrveaadlglyycvqgthfpytfgggtkleil

SCOP Domain Coordinates for d1yeel1:

Click to download the PDB-style file with coordinates for d1yeel1.
(The format of our PDB-style files is described here.)

Timeline for d1yeel1:

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Domains from same chain:
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d1yeel2