Lineage for d1pskh1 (1psk H:1-114)

  1. Root: SCOP 1.69
  2. 450777Class b: All beta proteins [48724] (144 folds)
  3. 450778Fold b.1: Immunoglobulin-like beta-sandwich [48725] (23 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 450779Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 450780Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (27 proteins)
  6. 450916Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 451214Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88552] (143 PDB entries)
  8. 451336Domain d1pskh1: 1psk H:1-114 [20139]
    Other proteins in same PDB: d1pskh2, d1pskl1, d1pskl2
    part of antibody against the melanoma associated gd2 ganglioside

Details for d1pskh1

PDB Entry: 1psk (more details), 2.8 Å

PDB Description: the crystal structure of an fab fragment that binds to the melanoma-associated gd2 ganglioside

SCOP Domain Sequences for d1pskh1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1pskh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2}
evqlqqsgpelvkpgasvkiscktsgytftkytmhwvkqshgkslewigdinpnnggtny
nqkfkgtatltvhkssttaymelrsltsedsavyyctsksfdywgqgttltvss

SCOP Domain Coordinates for d1pskh1:

Click to download the PDB-style file with coordinates for d1pskh1.
(The format of our PDB-style files is described here.)

Timeline for d1pskh1:

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Domains from same chain:
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d1pskh2