Lineage for d1qkzl1 (1qkz L:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653172Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (127 PDB entries)
  8. 653209Domain d1qkzl1: 1qkz L:1-107 [20136]
    Other proteins in same PDB: d1qkza_, d1qkzh1, d1qkzh2, d1qkzl2
    part of Fab MN14C11.6

Details for d1qkzl1

PDB Entry: 1qkz (more details), 1.95 Å

PDB Description: fab fragment (mn14c11.6) in complex with a peptide antigen derived from neisseria meningitidis p1.7 serosubtype antigen and domain ii from streptococcal protein g
PDB Compounds: (L:) antibody

SCOP Domain Sequences for d1qkzl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1qkzl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}
nivmtqtplslpvslgdqasiscrssqslvhsngntylhwylqkpgqspklliytvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgvyfcsqsthfptfgggtkleik

SCOP Domain Coordinates for d1qkzl1:

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Timeline for d1qkzl1: