SCOPe 2.05: Domain d3zcma_: 3zcm A:

Lineage for d3zcma_ (3zcm A:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)

6. Protein automated matches [190209] (4 species)
   not a true protein

7. Species Human immunodeficiency virus [TaxId:12721] [193331] (20 PDB entries)

8. Domain d3zcma_: 3zcm A: [201285]
   automated match to d3zcmb_
   complexed with act, gol, px3, so4

Details for d3zcma_

PDB Entry: 3zcm, 1.8 Å

PDB Description: Small molecule inhibitors of the LEDGF site of HIV integrase identified by fragment screening and structure based design.

PDB Compounds: (A:) hiv integrase

SCOPe Domain Sequences for d3zcma_:

Sequence, based on SEQRES records:

>d3zcma_ c.55.3.2 (A:) automated matches {Human immunodeficiency virus [TaxId: 12721]}
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtd
ngsnftsttvkaacwwagikqedgipynpqsqgviesmnkelkkiigqvrdqaehlktav
qmavfihnhkrkggiggysagerivdiiatdiq

Sequence, based on observed residues (ATOM records):

>d3zcma_ c.55.3.2 (A:) automated matches {Human immunodeficiency virus [TaxId: 12721]}
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtd
ngsnftsttvkaacwwagikqedgipynpqsqgviesmnkelkkiigqvrdqaehlktav
qmavfihnhkrkgysagerivdiiatdiq

Timeline for d3zcma_:

• d3zcma_ first appeared in SCOPe 2.03
  
• d3zcma_ appears in SCOPe 2.04
  
• d3zcma_ appears in SCOPe 2.06
  
• d3zcma_ appears in the current release, SCOPe 2.08