Lineage for d1nldl1 (1nld L:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653172Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (127 PDB entries)
  8. 653303Domain d1nldl1: 1nld L:1-107 [20110]
    Other proteins in same PDB: d1nldh1, d1nldh2, d1nldl2
    part of Fab 1583

Details for d1nldl1

PDB Entry: 1nld (more details), 2.9 Å

PDB Description: fab fragment of a neutralizing antibody directed against an epitope of gp41 from hiv-1
PDB Compounds: (L:) fab1583

SCOP Domain Sequences for d1nldl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1nldl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}
dvvmtqtpltlsvtigqpasisckssqslldsdgktylnwllqrpgqspkrliylvskld
sgvpdrftgsgsgtdftlkisrveaedlgvyycwqgthfprtfgggtkleik

SCOP Domain Coordinates for d1nldl1:

Click to download the PDB-style file with coordinates for d1nldl1.
(The format of our PDB-style files is described here.)

Timeline for d1nldl1:

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Domains from same chain:
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d1nldl2