SCOPe 2.04: Domain d3t89d_: 3t89 D:

Lineage for d3t89d_ (3t89 D:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.14: ClpP/crotonase [52095] (1 superfamily)
   core: 4 turns of (beta-beta-alpha)n superhelix

4. Superfamily c.14.1: ClpP/crotonase [52096] (5 families)

5. Family c.14.1.0: automated matches [191346] (1 protein)
   not a true family

6. Protein automated matches [190246] (46 species)
   not a true protein

7. Species Escherichia coli [TaxId:562] [196212] (2 PDB entries)

8. Domain d3t89d_: 3t89 D: [200772]
   automated match to d3t89f_
   complexed with gol, mli

Details for d3t89d_

PDB Entry: 3t89, 1.95 Å

PDB Description: crystal structure of escherichia coli menb, the 1,4-dihydroxy-2- naphthoyl-coa synthase in vitamin k2 biosynthesis

PDB Compounds: (D:) 1,4-Dihydroxy-2-naphthoyl-CoA synthase

SCOPe Domain Sequences for d3t89d_:

Sequence, based on SEQRES records:

>d3t89d_ c.14.1.0 (D:) automated matches {Escherichia coli [TaxId: 562]}
iypdeamlyapvewhdcsegfediryekstdgiakitinrpqvrnafrpltvkemiqala
daryddnigviiltgagdkafcsggdqkvrgdyggykddsgvhhlnvldfqrqirtcpkp
vvamvagysiggghvlhmmcdltiaadnaifgqtgpkvgsfdggwgasymarivgqkkar
eiwflcrqydakqaldmglvntvvpladleketvrwcremlqnspmalrclkaalnadcd
gqaglqelagnatmlfymteegqegrnafnqkrqpdfskfkrnp

Sequence, based on observed residues (ATOM records):

>d3t89d_ c.14.1.0 (D:) automated matches {Escherichia coli [TaxId: 562]}
iypdeamlyapvewhdcsegfediryekstdgiakitinrpqvrnafrpltvkemiqala
daryddnigviiltgagdkafcsggdqhlnvldfqrqirtcpkpvvamvagysiggghvl
hmmcdltiaadnaifgqtgpkvgsfdggwgasymarivgqkkareiwflcrqydakqald
mglvntvvpladleketvrwcremlqnspmalrclkaalnadcdgqaglqelagnatmlf
ymteegqegrnafnqkrqpdfskfkrnp

Timeline for d3t89d_:

• d3t89d_ first appeared in SCOPe 2.03
  
• d3t89d_ appears in SCOPe 2.05
  
• d3t89d_ appears in the current release, SCOPe 2.08